Views¶
Phenopackets service¶
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class
chord_metadata_service.phenopackets.api_views.
BiosampleViewSet
(**kwargs)¶ get: Return a list of all existing biosamples
post: Create a new biosample
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serializer_class
¶ alias of
chord_metadata_service.phenopackets.serializers.BiosampleSerializer
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class
chord_metadata_service.phenopackets.api_views.
DiagnosisViewSet
(**kwargs)¶ get: Return a list of all existing diagnoses
post: Create a new diagnosis
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serializer_class
¶ alias of
chord_metadata_service.phenopackets.serializers.DiagnosisSerializer
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class
chord_metadata_service.phenopackets.api_views.
DiseaseViewSet
(**kwargs)¶ get: Return a list of all existing diseases
post: Create a new disease
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serializer_class
¶ alias of
chord_metadata_service.phenopackets.serializers.DiseaseSerializer
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class
chord_metadata_service.phenopackets.api_views.
ExtendedPhenopacketsModelViewSet
(**kwargs)¶
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class
chord_metadata_service.phenopackets.api_views.
GeneViewSet
(**kwargs)¶ get: Return a list of all existing genes
post: Create a new gene
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serializer_class
¶ alias of
chord_metadata_service.phenopackets.serializers.GeneSerializer
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class
chord_metadata_service.phenopackets.api_views.
GenomicInterpretationViewSet
(**kwargs)¶ get: Return a list of all existing genomic interpretations
post: Create a new genomic interpretation
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serializer_class
¶ alias of
chord_metadata_service.phenopackets.serializers.GenomicInterpretationSerializer
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class
chord_metadata_service.phenopackets.api_views.
HtsFileViewSet
(**kwargs)¶ get: Return a list of all existing HTS files
post: Create a new HTS file
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serializer_class
¶ alias of
chord_metadata_service.phenopackets.serializers.HtsFileSerializer
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class
chord_metadata_service.phenopackets.api_views.
InterpretationViewSet
(**kwargs)¶ get: Return a list of all existing interpretations
post: Create a new interpretation
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serializer_class
¶ alias of
chord_metadata_service.phenopackets.serializers.InterpretationSerializer
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class
chord_metadata_service.phenopackets.api_views.
MetaDataViewSet
(**kwargs)¶ get: Return a list of all existing metadata records
post: Create a new metadata record
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serializer_class
¶ alias of
chord_metadata_service.phenopackets.serializers.MetaDataSerializer
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class
chord_metadata_service.phenopackets.api_views.
PhenopacketViewSet
(**kwargs)¶ get: Return a list of all existing phenopackets
post: Create a new phenopacket
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serializer_class
¶ alias of
chord_metadata_service.phenopackets.serializers.PhenopacketSerializer
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class
chord_metadata_service.phenopackets.api_views.
PhenopacketsModelViewSet
(**kwargs)¶ -
dispatch
(*args, **kwargs)¶ .dispatch() is pretty much the same as Django’s regular dispatch, but with extra hooks for startup, finalize, and exception handling.
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pagination_class
¶ alias of
chord_metadata_service.restapi.pagination.LargeResultsSetPagination
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class
chord_metadata_service.phenopackets.api_views.
PhenotypicFeatureViewSet
(**kwargs)¶ get: Return a list of all existing phenotypic features
post: Create a new phenotypic feature
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serializer_class
¶ alias of
chord_metadata_service.phenopackets.serializers.PhenotypicFeatureSerializer
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class
chord_metadata_service.phenopackets.api_views.
ProcedureViewSet
(**kwargs)¶ get: Return a list of all existing procedures
post: Create a new procedure
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serializer_class
¶ alias of
chord_metadata_service.phenopackets.serializers.ProcedureSerializer
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class
chord_metadata_service.phenopackets.api_views.
VariantViewSet
(**kwargs)¶ get: Return a list of all existing variants
post: Create a new variant
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serializer_class
¶ alias of
chord_metadata_service.phenopackets.serializers.VariantSerializer
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chord_metadata_service.phenopackets.api_views.
get_chord_phenopacket_schema
(self, request, *args, **kwargs)¶ get: Chord phenopacket schema that can be shared with data providers.
Patients service¶
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class
chord_metadata_service.patients.api_views.
IndividualViewSet
(**kwargs)¶ get: Return a list of all existing individuals
post: Create a new individual
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dispatch
(*args, **kwargs)¶ .dispatch() is pretty much the same as Django’s regular dispatch, but with extra hooks for startup, finalize, and exception handling.
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pagination_class
¶ alias of
chord_metadata_service.restapi.pagination.LargeResultsSetPagination
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serializer_class
¶ alias of
chord_metadata_service.patients.serializers.IndividualSerializer
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class
chord_metadata_service.patients.api_views.
PublicListIndividuals
(**kwargs)¶ View to return only count of all individuals after filtering.
Mcode service¶
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class
chord_metadata_service.mcode.api_views.
CancerConditionViewSet
(**kwargs)¶ -
serializer_class
¶ alias of
chord_metadata_service.mcode.serializers.CancerConditionSerializer
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class
chord_metadata_service.mcode.api_views.
CancerGeneticVariantViewSet
(**kwargs)¶ -
serializer_class
¶ alias of
chord_metadata_service.mcode.serializers.CancerGeneticVariantSerializer
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class
chord_metadata_service.mcode.api_views.
CancerRelatedProcedureViewSet
(**kwargs)¶ -
serializer_class
¶ alias of
chord_metadata_service.mcode.serializers.CancerRelatedProcedureSerializer
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class
chord_metadata_service.mcode.api_views.
GeneticSpecimenViewSet
(**kwargs)¶ -
serializer_class
¶ alias of
chord_metadata_service.mcode.serializers.GeneticSpecimenSerializer
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class
chord_metadata_service.mcode.api_views.
GenomicRegionStudiedViewSet
(**kwargs)¶ -
serializer_class
¶ alias of
chord_metadata_service.mcode.serializers.GenomicRegionStudiedSerializer
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class
chord_metadata_service.mcode.api_views.
GenomicsReportViewSet
(**kwargs)¶ -
serializer_class
¶ alias of
chord_metadata_service.mcode.serializers.GenomicsReportSerializer
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class
chord_metadata_service.mcode.api_views.
LabsVitalViewSet
(**kwargs)¶ -
serializer_class
¶ alias of
chord_metadata_service.mcode.serializers.LabsVitalSerializer
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class
chord_metadata_service.mcode.api_views.
MCodePacketViewSet
(**kwargs)¶ -
serializer_class
¶ alias of
chord_metadata_service.mcode.serializers.MCodePacketSerializer
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class
chord_metadata_service.mcode.api_views.
McodeModelViewSet
(**kwargs)¶ -
dispatch
(*args, **kwargs)¶ .dispatch() is pretty much the same as Django’s regular dispatch, but with extra hooks for startup, finalize, and exception handling.
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pagination_class
¶ alias of
chord_metadata_service.restapi.pagination.LargeResultsSetPagination
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class
chord_metadata_service.mcode.api_views.
MedicationStatementViewSet
(**kwargs)¶ -
serializer_class
¶ alias of
chord_metadata_service.mcode.serializers.MedicationStatementSerializer
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class
chord_metadata_service.mcode.api_views.
TNMStagingViewSet
(**kwargs)¶ -
serializer_class
¶ alias of
chord_metadata_service.mcode.serializers.TNMStagingSerializer
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chord_metadata_service.mcode.api_views.
get_mcode_schema
(self, request, *args, **kwargs)¶ get: Mcodepacket schema
Experiments service¶
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class
chord_metadata_service.experiments.api_views.
ExperimentViewSet
(**kwargs)¶ get: Return a list of all existing experiments
post: Create a new experiment
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dispatch
(*args, **kwargs)¶ .dispatch() is pretty much the same as Django’s regular dispatch, but with extra hooks for startup, finalize, and exception handling.
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pagination_class
¶ alias of
chord_metadata_service.restapi.pagination.LargeResultsSetPagination
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serializer_class
¶ alias of
chord_metadata_service.experiments.serializers.ExperimentSerializer
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chord_metadata_service.experiments.api_views.
get_experiment_schema
(self, request, *args, **kwargs)¶ get: Experiment schema
Resources service¶
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class
chord_metadata_service.resources.api_views.
ResourceViewSet
(**kwargs)¶ get: Return a list of all existing resources
post: Create a new resource
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pagination_class
¶ alias of
chord_metadata_service.restapi.pagination.LargeResultsSetPagination
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serializer_class
¶ alias of
chord_metadata_service.resources.serializers.ResourceSerializer
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