Katsu Metadata service
v2.11.0
Contents:
Introduction
Installation
Patients API
Phenopackets API
Experiments API
mCODE API endpoints
CHORD API
Resources API
Overview API
Public API
Schemas API
Autocomplete API
Ingestion workflow example
Models
Views
Katsu Metadata service
Docs
»
Index
Edit on GitHub
Index
B
|
C
|
D
|
E
|
G
|
H
|
I
|
L
|
M
|
P
|
R
|
S
|
T
|
V
B
Biosample (class in chord_metadata_service.phenopackets.models)
Biosample.DoesNotExist
Biosample.MultipleObjectsReturned
BiosampleViewSet (class in chord_metadata_service.phenopackets.api_views)
C
CancerCondition (class in chord_metadata_service.mcode.models)
CancerCondition.DoesNotExist
CancerCondition.MultipleObjectsReturned
CancerConditionViewSet (class in chord_metadata_service.mcode.api_views)
CancerGeneticVariant (class in chord_metadata_service.mcode.models)
CancerGeneticVariant.DoesNotExist
CancerGeneticVariant.MultipleObjectsReturned
CancerGeneticVariantViewSet (class in chord_metadata_service.mcode.api_views)
CancerRelatedProcedure (class in chord_metadata_service.mcode.models)
CancerRelatedProcedure.DoesNotExist
CancerRelatedProcedure.MultipleObjectsReturned
CancerRelatedProcedureViewSet (class in chord_metadata_service.mcode.api_views)
chord_metadata_service.chord.models (module)
chord_metadata_service.experiments.api_views (module)
chord_metadata_service.experiments.models (module)
chord_metadata_service.mcode.api_views (module)
chord_metadata_service.mcode.models (module)
chord_metadata_service.patients.api_views (module)
chord_metadata_service.patients.models (module)
chord_metadata_service.phenopackets.api_views (module)
chord_metadata_service.phenopackets.models (module)
chord_metadata_service.resources.api_views (module)
chord_metadata_service.resources.models (module)
clean() (chord_metadata_service.chord.models.Dataset method)
(chord_metadata_service.phenopackets.models.GenomicInterpretation method)
(chord_metadata_service.resources.models.Resource method)
D
Dataset (class in chord_metadata_service.chord.models)
Dataset.DoesNotExist
Dataset.MultipleObjectsReturned
Diagnosis (class in chord_metadata_service.phenopackets.models)
Diagnosis.DoesNotExist
Diagnosis.MultipleObjectsReturned
DiagnosisViewSet (class in chord_metadata_service.phenopackets.api_views)
Disease (class in chord_metadata_service.phenopackets.models)
Disease.DoesNotExist
Disease.MultipleObjectsReturned
DiseaseViewSet (class in chord_metadata_service.phenopackets.api_views)
dispatch() (chord_metadata_service.experiments.api_views.ExperimentViewSet method)
(chord_metadata_service.mcode.api_views.McodeModelViewSet method)
(chord_metadata_service.patients.api_views.IndividualViewSet method)
(chord_metadata_service.phenopackets.api_views.PhenopacketsModelViewSet method)
E
Experiment (class in chord_metadata_service.experiments.models)
Experiment.DoesNotExist
Experiment.MultipleObjectsReturned
ExperimentResult (class in chord_metadata_service.experiments.models)
ExperimentResult.DoesNotExist
ExperimentResult.MultipleObjectsReturned
ExperimentViewSet (class in chord_metadata_service.experiments.api_views)
ExtendedPhenopacketsModelViewSet (class in chord_metadata_service.phenopackets.api_views)
G
Gene (class in chord_metadata_service.phenopackets.models)
Gene.DoesNotExist
Gene.MultipleObjectsReturned
GeneticSpecimen (class in chord_metadata_service.mcode.models)
GeneticSpecimen.DoesNotExist
GeneticSpecimen.MultipleObjectsReturned
GeneticSpecimenViewSet (class in chord_metadata_service.mcode.api_views)
GeneViewSet (class in chord_metadata_service.phenopackets.api_views)
GenomicInterpretation (class in chord_metadata_service.phenopackets.models)
GenomicInterpretation.DoesNotExist
GenomicInterpretation.MultipleObjectsReturned
GenomicInterpretationViewSet (class in chord_metadata_service.phenopackets.api_views)
GenomicRegionStudied (class in chord_metadata_service.mcode.models)
GenomicRegionStudied.DoesNotExist
GenomicRegionStudied.MultipleObjectsReturned
GenomicRegionStudiedViewSet (class in chord_metadata_service.mcode.api_views)
GenomicsReport (class in chord_metadata_service.mcode.models)
GenomicsReport.DoesNotExist
GenomicsReport.MultipleObjectsReturned
GenomicsReportViewSet (class in chord_metadata_service.mcode.api_views)
get_chord_phenopacket_schema() (in module chord_metadata_service.phenopackets.api_views)
get_experiment_schema() (in module chord_metadata_service.experiments.api_views)
get_mcode_schema() (in module chord_metadata_service.mcode.api_views)
H
HtsFile (class in chord_metadata_service.phenopackets.models)
HtsFile.DoesNotExist
HtsFile.MultipleObjectsReturned
HtsFileViewSet (class in chord_metadata_service.phenopackets.api_views)
I
Individual (class in chord_metadata_service.patients.models)
Individual.DoesNotExist
Individual.MultipleObjectsReturned
IndividualViewSet (class in chord_metadata_service.patients.api_views)
Instrument (class in chord_metadata_service.experiments.models)
Instrument.DoesNotExist
Instrument.MultipleObjectsReturned
Interpretation (class in chord_metadata_service.phenopackets.models)
Interpretation.DoesNotExist
Interpretation.MultipleObjectsReturned
InterpretationViewSet (class in chord_metadata_service.phenopackets.api_views)
L
LabsVital (class in chord_metadata_service.mcode.models)
LabsVital.DoesNotExist
LabsVital.MultipleObjectsReturned
LabsVitalViewSet (class in chord_metadata_service.mcode.api_views)
M
McodeModelViewSet (class in chord_metadata_service.mcode.api_views)
MCodePacket (class in chord_metadata_service.mcode.models)
MCodePacket.DoesNotExist
MCodePacket.MultipleObjectsReturned
MCodePacketViewSet (class in chord_metadata_service.mcode.api_views)
MedicationStatement (class in chord_metadata_service.mcode.models)
MedicationStatement.DoesNotExist
MedicationStatement.MultipleObjectsReturned
MedicationStatementViewSet (class in chord_metadata_service.mcode.api_views)
MetaData (class in chord_metadata_service.phenopackets.models)
MetaData.DoesNotExist
MetaData.MultipleObjectsReturned
MetaDataViewSet (class in chord_metadata_service.phenopackets.api_views)
P
pagination_class (chord_metadata_service.experiments.api_views.ExperimentViewSet attribute)
(chord_metadata_service.mcode.api_views.McodeModelViewSet attribute)
(chord_metadata_service.patients.api_views.IndividualViewSet attribute)
(chord_metadata_service.phenopackets.api_views.PhenopacketsModelViewSet attribute)
(chord_metadata_service.resources.api_views.ResourceViewSet attribute)
Phenopacket (class in chord_metadata_service.phenopackets.models)
Phenopacket.DoesNotExist
Phenopacket.MultipleObjectsReturned
PhenopacketsModelViewSet (class in chord_metadata_service.phenopackets.api_views)
PhenopacketViewSet (class in chord_metadata_service.phenopackets.api_views)
PhenotypicFeature (class in chord_metadata_service.phenopackets.models)
PhenotypicFeature.DoesNotExist
PhenotypicFeature.MultipleObjectsReturned
PhenotypicFeatureViewSet (class in chord_metadata_service.phenopackets.api_views)
Procedure (class in chord_metadata_service.phenopackets.models)
Procedure.DoesNotExist
Procedure.MultipleObjectsReturned
ProcedureViewSet (class in chord_metadata_service.phenopackets.api_views)
Project (class in chord_metadata_service.chord.models)
Project.DoesNotExist
Project.MultipleObjectsReturned
PublicListIndividuals (class in chord_metadata_service.patients.api_views)
R
Resource (class in chord_metadata_service.resources.models)
Resource.DoesNotExist
Resource.MultipleObjectsReturned
ResourceViewSet (class in chord_metadata_service.resources.api_views)
S
save() (chord_metadata_service.chord.models.Dataset method)
(chord_metadata_service.resources.models.Resource method)
serializer_class (chord_metadata_service.experiments.api_views.ExperimentViewSet attribute)
(chord_metadata_service.mcode.api_views.CancerConditionViewSet attribute)
(chord_metadata_service.mcode.api_views.CancerGeneticVariantViewSet attribute)
(chord_metadata_service.mcode.api_views.CancerRelatedProcedureViewSet attribute)
(chord_metadata_service.mcode.api_views.GeneticSpecimenViewSet attribute)
(chord_metadata_service.mcode.api_views.GenomicRegionStudiedViewSet attribute)
(chord_metadata_service.mcode.api_views.GenomicsReportViewSet attribute)
(chord_metadata_service.mcode.api_views.LabsVitalViewSet attribute)
(chord_metadata_service.mcode.api_views.MCodePacketViewSet attribute)
(chord_metadata_service.mcode.api_views.MedicationStatementViewSet attribute)
(chord_metadata_service.mcode.api_views.TNMStagingViewSet attribute)
(chord_metadata_service.patients.api_views.IndividualViewSet attribute)
(chord_metadata_service.phenopackets.api_views.BiosampleViewSet attribute)
(chord_metadata_service.phenopackets.api_views.DiagnosisViewSet attribute)
(chord_metadata_service.phenopackets.api_views.DiseaseViewSet attribute)
(chord_metadata_service.phenopackets.api_views.GeneViewSet attribute)
(chord_metadata_service.phenopackets.api_views.GenomicInterpretationViewSet attribute)
(chord_metadata_service.phenopackets.api_views.HtsFileViewSet attribute)
(chord_metadata_service.phenopackets.api_views.InterpretationViewSet attribute)
(chord_metadata_service.phenopackets.api_views.MetaDataViewSet attribute)
(chord_metadata_service.phenopackets.api_views.PhenopacketViewSet attribute)
(chord_metadata_service.phenopackets.api_views.PhenotypicFeatureViewSet attribute)
(chord_metadata_service.phenopackets.api_views.ProcedureViewSet attribute)
(chord_metadata_service.phenopackets.api_views.VariantViewSet attribute)
(chord_metadata_service.resources.api_views.ResourceViewSet attribute)
T
Table (class in chord_metadata_service.chord.models)
Table.DoesNotExist
Table.MultipleObjectsReturned
TableOwnership (class in chord_metadata_service.chord.models)
TableOwnership.DoesNotExist
TableOwnership.MultipleObjectsReturned
TNMStaging (class in chord_metadata_service.mcode.models)
TNMStaging.DoesNotExist
TNMStaging.MultipleObjectsReturned
TNMStagingViewSet (class in chord_metadata_service.mcode.api_views)
V
Variant (class in chord_metadata_service.phenopackets.models)
Variant.DoesNotExist
Variant.MultipleObjectsReturned
VariantViewSet (class in chord_metadata_service.phenopackets.api_views)
Read the Docs
v: v2.11.0
Versions
v2.11.0
develop
Downloads
On Read the Docs
Project Home
Builds
Free document hosting provided by
Read the Docs
.